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Introduction The NCBI Conserved Domain Database (CDD) is a collection of annotated multiple sequence alignments representing protein domain families. It is widely used in bioinformatics to identify functional and evolutionary relationships in proteins. One of the most efficient ways to analyze conserved domains in proteins is through RPS-BLAST ...

The field of bioinformatics, a fascinating intersection of biology and information technology, has witnessed remarkable advancements in recent years. Central to these advancements are tools like HMMER3, Biopython, and CD-HIT, each playing a pivotal role in understanding and interpreting biological data. This blog post aims to demystify these too...